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@TeenQ.. Thanks.

But, I've already done all the cleaning and virus/Trojan removal, and there was no backup/restore point to go to.

My only issue at this point is how to restore my program...

I've been cleaning my system after a Trojan attack (fakesysdef). Most everything is back to normal except for the "All Programs" function of the Start Menu. Some folders and links are there, but many...